PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11362.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 413aa    MW: 45902.9 Da    PI: 8.1033
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11362.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.11.3e-3190194199
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 
                 f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l+
  KHN11362.1  90 FEKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGlGDlYRHRLY 188
                 99****************************66677899*************************************************766887888888 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 + ++++
  KHN11362.1 189 IDWRKR 194
                 888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-4181196IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-2988178IPR015300DNA-binding pseudobarrel domain
CDDcd100177.01E-2789177No hitNo description
SMARTSM010193.2E-2490195IPR003340B3 DNA binding domain
PfamPF023623.1E-2990194IPR003340B3 DNA binding domain
PROSITE profilePS5086314.32590195IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MELMQQVKGN YSDSREEEEA AAEIITITRE PESSRLHQQD AASNFGKKLD LMDLSLGSSK  60
EEEEGKLQQG GGGGGVVHHA HEIVEKENMF EKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS  120
SSNEKGLLLN FEDRNGKVWR FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG DIVSFQRGLG  180
DLYRHRLYID WRKRSAHPHA HHHAPDPLFL PSIRWYSLPP TMPPRYHHDH HFHHHLNYNN  240
LFTFQQHQYQ LGAATAAATA AHHGDQNSGS GSLYYLRSSM SMGGGDQNLQ GRGNNIVPMI  300
IDSVPVSVGH HNNRHGNGGI TSGGATSSGK RLRLFGVNME CASSAEDSKG LSSGSAAHVT  360
TAASSSLHQR LRLPLPHEDP LSSSSARFGD HKGGSTGTSL LFDLDPSLQY HRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-498719511118DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-152AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553806.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_006604926.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_014627637.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_014627638.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_014627639.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827993e-80NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A0B2PV200.0A0A0B2PV20_GLYSO; B3 domain-containing transcription factor NGA1
TrEMBLI1NCS40.0I1NCS4_SOYBN; Uncharacterized protein
STRINGGLYMA19G45090.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-66B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]